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For research use only.
Description:
HighFidelity Biotin16 PCR Labeling Kit is designed to produce randomly Biotin16-modified DNA probes by PCR. Such probes are ideally suited for in situ hybridization and Northern Blot experiments. PCR-based labeling is superior to random-primed labeling by Klenow fragment if template amounts are limited or amplification of a specific DNA fragments is required.Biotin-16-dUTP is efficiently incorporated into DNA as substitute for its natural counterpart dTTP using an optimized reaction buffer and a High Fidelity Polymerase. 50 % Biotin-16-dUTP substitution typically results in an optimal balance between reaction and labeling efficiency. Individual optimization of Biotin-16-dUTP/dTTP ratio however, can easily be achieved with the single nucleotide format. The resulting Biotin16-modified DNA probe can subsequently be detected by HRP- or AP-modified Streptavidin.
The kit contains sufficient reagents for 175 labeling reactions of 20 μl each (50 % Biotin16-dUTP substitution, 100 μM dATP/dGTP/dCTP, 50 μM dTTP, 50 μM Biotin16-dUTP).Shipping: shipped on gel packs
Storage Conditions: store at -20 °C
avoid freeze/thaw cyclesShelf Life: 12 months
Content:
High Fidelity Polymerase
in storage buffer with 50% glycerol (v/v)
5x 40 μl (5x 100 units, 2.5 units/μl)High Fidelity Labeling Buffer
1x 500 μl (10x)dATP - Solution
1x 20 μl (100 mM)dGTP - Solution
1x 20 μl (100 mM)dCTP - Solution
1x 20 μl (100 mM)dTTP - Solution
1x 20 μl (100 mM)Biotin-16-dUTP
1x 200 μl (1 mM)
Lambda DNA
1x 20 μl (100 ng/μl)500 bp forward primer
1x 20 μl (10 μM)500 bp reverse primer
1x 20 μl (10 μM)PCR-grade water
1x 1.2 mlTo be provided by user
DNA template
Primer
DNA purification tools (optional)1. Preparation of working solutions
1.1 Preparation of 1 mM dATP/dCTP/dGTP working solution
- Thaw 100 mM dATP, 100 mM dCTP and 100 mM dGTP solutions on ice, voretex and spin-down briefly.
- Prepare a 1:100 dilution with PCR-grade water to achieve a final concentration of 1 mM (e.g. 2 μl 100 mM dATP + 2 μl 100 mM dCTP + 2 μl 100 mM dGTP + 194 μl PCR-grade water).
- 1 mM ATP/CTP/GTP working solution can be stored at -20°C. Prepare aliquots to avoid freeze/thaw cycles.
1.2 Preparation of 1 mM dTTP working solution
- Thaw 100 mM dTTP solution on ice, voretex and spin-down briefly.
- Prepare a 1:100 dilution with PCR-grade water to achieve a final concentration of 1 mM (e.g. 2 μl 100 mM dTTP + 198 μl PCR-grade water).
- 1 mM dTTP working solution can be stored at -20 °C. Prepare aliquots to avoid freeze/thaw cycles.
3. Standard PCR Labeling protocol
The standard protocol is set-up for labeling of a 500 bp DNA fragment. An optimal balance between reaction and labeling efficiency is typically achieved with 50% Biotin-16-dUTP substitution following the standard protocol below however, individual optimization might improve results for individual applications.
- Assemble the PCR on ice in the order stated below (DNAse-free reaction tube).
- Voretex and spin-down briefly.
Component Volume Final concenctration PCR-grade water X μl High Fidelity Buffer (10x) 2 μl 1x 1 mM dATP/dCTP/ dGTP working solution (s. 1.1) 2 μl 100 μM 1 mM dTTP working solution (s. 1.2) 1 μl 50 μM 1 mM Biotin-16-dUTP 1 μl 50 μM forward primer
(10 μM)X μl 0.1 - 1 μM (e.g. 0.3 μM 500 bp forward primer) reverse primer
(10 μM)X μl 0.1 - 1 μM (e.g. 0.3 μM 500 bp reverse primer) template DNA X μl 1 - 10 ng genomic DNA (e.g. 1 ng Lambda DNA) High Fidelity Pol (2.5 units/μl) 1 μl 2.5 units Total volume 20 μl Recommended cycling conditions
Cycle step Temperature Time Cycles Initial
denaturation95°C 2 min 1x Denaturation
Annealing1)
Elongation2)95°C
58°C
68°C20 sec
30 sec
60 sec30x Final
Elongation68°C 2 min 1x 1)The annealing temperature depends on the melting temperature of primers used.
2)The elongation time depends on the length of fragments to be amplified. A time of 2 min/kbp is recommended. Elongation at 72°C works as well.For optimal amplification results and high incorporation rates an individual optimization of the recommended PCR assay and cycling conditions may be necessary for each new primer-template pair.
4. Probe purification:
Probe purification is not required for most hybridization experiments. If a downstream application requires purification (e.g. concentration determination by absorbance measurement) we recommend silica-membrane or gel filtration-based purification.
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产品组分
内容
型号
规格 储存温度
高保真生物素16PCR标记试剂盒
APP101BIO16-01 175次x20μL -20°C 高保真生物素16PCR标记试剂盒
APP101BIO16-02 350次x20μL -20°C 操作手册
1 1 常温室温
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注意事项
保存建议 厂家推荐蓝冰运输。当您收到产品后,按照说明书建议保存于-20°C。 -
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