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For general laboratory use.
Shipping: shipped on gel packs
Storage Conditions: store at -20 °C
avoid freeze/thaw cycles, store darkShelf Life: 12 months
Description:
HighFidelity LNA PCR Labeling Kit is designed to produce randomly Locked nucleic acid (LNA)-modified DNA probes by PCR. Such probes are ideally suited for in situ hybridization and Northern Blot experiments.The ribose ring of locked nucleic acids is "locked" in the ideal conformation for Watson-Crick binding. LNA-modified DNA probes therefore possess an unprecedented thermal stability upon hybridization resulting in an increased sensitivity.
LNA-UTP, LNA-CTP, LNA-ATP and LNA-GTP are efficiently incorporated into DNA as substitute for their natural counterpart (dTTP, dCTP, dATP or dGTP, respectively) using an optimized reaction buffer and a High Fidelity Polymerase. 50 % LNA-NTP substitution typically results in an optimal balance between reaction and labeling efficiency. Individual optimization of LNA-NTP/dNTP ratio however, can easily be achieved with the single nucleotide format.
The kit contains sufficient reagents for 10 labeling reactions each LNA-NTP (20 μl each (50 % LNA-NTP substitution).
Content:
High Fidelity Polymerase
in storage buffer with 50% glycerol (v/v)
2x 40 μl (2x 100 units, 2.5 units/μl)High Fidelity Labeling Buffer
1x 500 μl (10x)dATP - Solution
1x 20 μl (100 mM)dGTP - Solution
1x 20 μl (100 mM)dCTP - Solution
1x 20 μl (100 mM)dTTP - Solution
1x 20 μl (100 mM)LNA-ATP
1x 10 μl (1 mM)LNA-GTP
1x 10 μl (1 mM)LNA-CTP
1x 10 μl (1 mM)LNA-UTP
1x 10 μl (1 mM)Lambda DNA
1x 20 μl (100 ng/μl)500 bp forward primer
1x 20 μl (10 μM)500 bp reverse primer
1x 20 μl (10 μM)PCR-grade water
1x 1.2 mlTo be provided by user
DNA template
Primer
DNA purification tools (optional)1. Preparation of working solutions
Preparation of working solutions is exemplary described for substitution of dTTP by LNA-UTP.
Working solutions for LNA-ATP, LNA-GTP and LNA-CTP are correspondingly prepared by substitution of the natural counterpart (dATP, dGTP or dCTP, respectively)1.1 Preparation of 1 mM dATP/dCTP/dGTP working solution
- Thaw 100 mM dATP, 100 mM dCTP and 100 mM dGTP solutions on ice, voretex and spin-down briefly.
- Prepare a 1:100 dilution with PCR-grade water to achieve a final concentration of 1 mM (e.g. 2 μl 100 mM dATP + 2 μl 100 mM dCTP + 2 μl 100 mM dGTP + 194 μl PCR-grade water).
- 1 mM ATP/CTP/GTP working solution can be stored at -20°C. Prepare aliquots to avoid freeze/thaw cycles.
1.2 Preparation of 1 mM dTTP working solution
- Thaw 100 mM dTTP solution on ice, voretex and spin-down briefly.
- Prepare a 1:100 dilution with PCR-grade water to achieve a final concentration of 1 mM (e.g. 2 μl 100 mM dTTP + 198 μl PCR-grade water).
- 1 mM dTTP working solution can be stored at -20 °C. Prepare aliquots to avoid freeze/thaw cycles.
3. Standard PCR Labeling protocol
The standard protocol is set-up for labeling of a 500 bp DNA fragment. An optimal balance between reaction and labeling efficiency is typically achieved with 50% LNA-NTP substitution following the standard protocol below however, individual optimization might improve results for individual applications.
- Assemble the PCR on ice in the order stated below (DNAse-free reaction tube).
- Voretex and spin-down briefly.
- Perform assay set-up and reaction under low-light conditions.
Pipetting scheme is exemplary outlined for substitution of dTTP by LNA-UTP:
Component Volume Final concenctration PCR-grade water X μl High Fidelity Labeling Buffer (10x) 2 μl 1x 1 mM dATP/dCTP/ dGTP working solution (s. 1.1) 2 μl 100 μM 1 mM dTTP working solution (s. 1.2) 1 μl 50 μM 1 mM LNA-UTP 1 μl 50 μM forward primer
(10 μM)X μl 0.1 - 1 μM (e.g. 0.3 μM 500 bp forward primer) reverse primer
(10 μM)X μl 0.1 - 1 μM (e.g. 0.3 μM 500 bp reverse primer) template DNA X μl 1 - 10 ng genomic DNA (e.g. 1 ng Lambda DNA) High Fidelity Polymerase (2.5 units/μl) 1 μl 2.5 units Total volume 20 μl Recommended cycling conditions
Cycle step Temperature Time Cycles Initial
denaturation95°C 2 min 1x Denaturation
Annealing1)
Elongation2)95°C
58°C
68°C20 sec
30 sec
60 sec30x Final
Elongation68°C 2 min 1x
1)The annealing temperature depends on the melting temperature of primers used.
2)The elongation time depends on the length of fragments to be amplified. A time of 2 min/kbp is recommended. Elongation at 72°C works as well.For optimal amplification results and high incorporation rates an individual optimization of the recommended PCR assay and cycling conditions may be necessary for each new primer-template pair.
4. Probe purification:
Probe purification is not required for most hybridization experiments. If a downstream application requires purification (e.g. concentration determination by absorbance measurement) we recommend silica-membrane or gel filtration-based purification.
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产品组分
内容 型号
规格 储存温度
高保真LNA PCR标记试剂盒
APP101LNA-01 40次x20ul
-20°C 高保真LNA PCR标记试剂盒
APP101LNA-02 80次x20ul
-20°C 操作手册
1 1 常温
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保存建议 厂家推荐蓝冰运输。当您收到产品后，按照说明书建议保存于-20°C。 -
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